# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4
PortSystem 1.0
PortGroup python 1.0
PortGroup wxWidgets 1.0
name py-pyphant
version 1.0b3
revision 1
categories-append science
description python framework for analysing and managing scientific data
maintainers fmf.uni-freiburg.de:servicegruppe.wissinfo \
{rowue @rowue} openmaintainer
long_description The python framework pyphant allows for the creation \
and application of data flow models. The central idea \
of this approach is to encapsulate each data processing \
step in one unit which is called a worker. \
A worker receives input via sockets and provides the \
results of its data processing via plugs. These can be \
inserted into other workers' sockets. The resulting \
directed graph is called a recipe. Classes for these \
objects comprise the Pyphant core. \
To implement actual processing steps, Pyphant relies on \
third party plug-ins, also referred to as toolboxes, \
which extend the basic worker class, e.g. \
py-pyphant-imageprocessing. \
On top of the core, Pyphant offers a data exchange layer \
on basis of numpy arrays which facilitates the \
interoperability of the workers and fully supports \
physical quantities with errors and units. \
The third layer is a graphical user interface \
allowing for the interactive construction of recipes \
as well as the calculation and visualization of data \
from any worker in the recipe.
homepage http://www.fmf.uni-freiburg.de/service/servicegruppen/sg_wissinfo/projekte/Pyphant
license BSD
platforms darwin
# py26-scipy is not universal
universal_variant no
distname pyphant
master_sites sourceforge:pyphant
use_configure no
python.versions 27
if {${name} ne ${subport}} {
depends_build-append port:py${python.version}-setuptools
if [string match {py??-pyphant-*} ${subport}] {
depends_lib-append port:py${python.version}-pyphant
}
}
foreach python.vers ${python.versions} {
subport py${python.vers}-${distname} {
PortGroup app 1.0
set python.version ${python.vers}
worksrcdir ${distname}-${version}
distfiles ${distname}-${version}${extract.suffix}
checksums rmd160 aa56f61a73300651730f867b249264e2ca63d200 \
sha256 c873352467f9ecf96fac03082e3cbc4153d13f8103e5339e608897884867db53
app.name pyphant-${python.branch}
app.executable pyphant-${python.branch}
app.icon ${filespath}/Pyphant.icns
wxWidgets.use wxPython-3.0
depends_lib-append port:py${python.version}-numpy \
port:py${python.version}-scipy \
port:py${python.version}-tables \
port:py${python.version}-matplotlib \
port:py${python.version}-simplejson \
port:py${python.version}-paste \
port:py${python.version}-mx-base \
port:py${python.version}-sogl \
port:py${python.version}-wxpython-3.0
depends_run-append port:py${python.version}-configobj \
port:py${python.version}-tornado
pre-destroot {
file copy ${filespath}/pyphant.quartz ${destroot}${prefix}/bin
file rename ${destroot}${prefix}/bin/pyphant.quartz ${destroot}${prefix}/bin/pyphant-${python.branch}
reinplace "s|@PREFIX@|${prefix}|" ${destroot}${prefix}/bin/pyphant-${python.branch}
reinplace "s|@PYTHONBRANCH@|${python.branch}|" ${destroot}${prefix}/bin/pyphant-${python.branch}
}
}
subport py${python.vers}-${distname}-fmf {
set python.version ${python.vers}
description Full-Metadata Format toolbox for py${python.version}-pyphant
long_description This toolbox enables the py${python.version}-pyphant framework to read \
files written in the Full-Metadata Format (FMF). \
See http://arxiv.org/abs/0904.1299 for an introduction \
to the FMF. There is also support for writing files \
in the FMF, although this feature is currently not \
accessible from the pyphant GUI.
distname ${distname}.fmf-${version}
checksums rmd160 42d70609400f636b2c4ffced5e5f2192f76ac4ad \
sha256 8ef7acf200f6a7a8805d4f91680fd771129f1c68178d8d710b7a9a322267cdfc
}
subport py${python.vers}-${distname}-imageprocessing {
set python.version ${python.vers}
description imageprocessing toolbox for py${python.version}-pyphant
long_description This toolbox provides a set of imageprocessing workers, \
i.e. encapsulated data processing steps for the \
py${python.version}-pyphant framework. Currently there are 22 workers \
providing operations varying from simple functions like \
'inversion' or some scipy.ndimage filters to more complex \
operations, e.g. auto-focus evaluation of transmitted \
light microscopy photographs.
distname ${distname}.imageprocessing-${version}
checksums rmd160 e4d160989c0e5b07528577052dd451b47828a7d4 \
sha256 9e1619cf3abbe94ce785b9b5b02383b5a31f9ba2ef0bc75922c785195620229f
revision 2
# numpy and scipy are already dependencies of pyphant
depends_lib-append port:py${python.version}-Pillow \
port:py${python.version}-numpy \
port:py${python.version}-scipy
patchfiles Pillow_patch-setup.py.diff \
Pillow_patch-pyphant.imageprocessing.egg-info-requires.txt.diff
variant pil description {Use PIL instead of Pillow as the imaging library} {
depends_lib-replace port:py${python.version}-Pillow port:py${python.version}-pil
patchfiles-delete Pillow_patch-setup.py.diff
patchfiles-delete Pillow_patch-pyphant.imageprocessing.egg-info-requires.txt.diff
}
if {![catch {set pil_installed [lindex [registry_active py${python.version}-pil] 0]}]} {
default_variants +pil
}
}
subport py${python.vers}-${distname}-osc {
set python.version ${python.vers}
description organic solar cells toolbox for py${python.version}-pyphant
long_description This Toolbox offers various workers for the \
analysis of organic solar cells. It is joined \
work with Kristian O. Sylvester-Hvid from the \
Risø National Laboratory for Sustainable Energy. \
The main purpose at the moment is the generation \
of height maps for polymer based solar cells. \
The developed workers are however applicable in \
a wide range of problems.
distname ${distname}.osc-${version}
checksums rmd160 1093b2a9b036648f76089f5d1b919186b7a2dd2c \
sha256 ba573aaa5cb78c4f692798e2c6845f4a0b11b99d721905be56c47db1885d3e67
depends_lib-append port:py${python.version}-numpy \
port:py${python.version}-scipy \
port:py${python.version}-matplotlib
}
subport py${python.vers}-${distname}-statistics {
set python.version ${python.vers}
description statistics toolbox for py${python.version}-pyphant
long_description This toolbox provides the histogram worker which enables \
the py${python.version}-pyphant framework to obtain histograms from \
array-like data.
distname ${distname}.statistics-${version}
checksums rmd160 893f87f8d9b206a71a963ba30be37e2fd4bb002f \
sha256 ae71e825508fe74c88693108a7bc0612416fdabb1e71442c815ccbfe2b37c7cb
depends_lib-append port:py${python.version}-numpy \
port:py${python.version}-scipy
}
subport py${python.vers}-${distname}-tools {
set python.version ${python.vers}
description tools toolbox for py${python.version}-pyphant
long_description This toolbox currently provides two workers for the \
py${python.version}-pyphant framework. These workers can be integrated \
in a data flow model and simply serve as data sources for \
data that is managed by a py${python.version}-pyphant core module called \
KnowledgeManager (KM). The KM accumulates metadata in a \
sqlite3 database and the above mentioned workers present \
parameters to perform a metadata search and finally \
load and provide the data that matched the search.
distname ${distname}.tools-${version}
checksums rmd160 7eabbd970968bd118a9fd93670bf79e48790d130 \
sha256 1d97e9b5b798047aa529148e8c5356cdbc61a3333394b5e72e8cf6b429c3b23f
}
}