--- setup.py.orig 2011-01-10 16:10:04.000000000 -0500 +++ setup.py 2011-01-10 16:23:44.000000000 -0500 @@ -303,13 +303,13 @@ 'Bio/trie.c'], include_dirs=["Bio"] ), -#Commented out due to the build dependency on flex, see Bug 2619 -# Extension('Bio.PDB.mmCIF.MMCIFlex', -# ['Bio/PDB/mmCIF/lex.yy.c', -# 'Bio/PDB/mmCIF/MMCIFlexmodule.c'], -# include_dirs=["Bio"], -# libraries=["fl"] -# ), +# Commented out due to the build dependency on flex, see Bug 2619 + Extension('Bio.PDB.mmCIF.MMCIFlex', + ['Bio/PDB/mmCIF/lex.yy.c', + 'Bio/PDB/mmCIF/MMCIFlexmodule.c'], + include_dirs=["Bio"], + libraries=["fl"] + ), Extension('Bio.Nexus.cnexus', ['Bio/Nexus/cnexus.c'] ),