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\documentclass{book}
\setcounter{tocdepth}{3}
\usepackage{longtable,epsfig}
\usepackage{makeidx}
\usepackage{aips2help}
\usepackage{hyperref}
\makeindex
\begin{document}
\input{aips2defs}
​
\title{CASA Toolkit Reference Manual}
\author{CASA Group, eds}
\maketitle
\newpage
\vspace*{\fill}
Copyright \copyright 2016 AUI
​
CASA Reference Manual.
​
The CASA Reference Manual contains the documentation on the tool-based functionality
within the system. There are five broad packages:
​
\begin{itemize}
\item General- modules that are of general use for astronomical processing
    \begin{itemize}
    \item \ahlink{Images}{images} - create, manipulate and analyze images
    \item \ahlink{Coordsys}{images:coordsys} - functionality for manipulating coordinate systems
    \item \ahlink{MeasurementSet}{ms} - functionality for manipulating MeasurementSets (CASA data structures)
    \item \ahlink{Measures}{measures} - functionality for handling quantities with a specified reference frame
    \item \ahlink{Quanta}{quanta} - functionality for handling quantities (values with units)
    \end{itemize}
\item Synthesis - modules needed for processing synthesis data
    \begin{itemize}
    \item \ahlink{Autoflag}{autoflag} - automatic flagging capabilities (based on selection or statistics)
    \item \ahlink{Calibrater}{calibrater} - synthesis calibration facilities
    \item \ahlink{Flagger}{flagger} - flagging capabilities (based on selection or statistics)
    \item \ahlink{TestFlagger}{testflagger} - new flagging framework  (based on selection or statistics)
    \item \ahlink{Imager}{imager} - synthesis and single dish imaging including deconvolution
    \item \ahlink{Simulator}{simulator} - facilities for simulation of telescope data
    \item \ahlink{vpmanager}{imager} - facilities for specifying voltage patterns and primary beams
    \end{itemize}
\item Utility - non-astronomy specific functionality
    \begin{itemize}
    \item \ahlink{Table}{table} - functionality for manipulating tables in CASA
    \end{itemize}
\item Third Party - modules that interface to 3rd party packages
    \begin{itemize}
    \item \ahlink{Atmosphere}{atmosphere} - Interface to Juan R. Padro's Atmospheric Transmission Model (ATM) library.
    \end{itemize}
\item Single-dish - functionality for processing single-dish data
        \begin{itemize}
        \item \ahlink{ASAP}{sd} - single-dish data analysis package 
        \end{itemize}
\end{itemize}
\newpage
\tableofcontents
\input{General.tex}
\input{SynthesisRef.tex}
\input{Utility.tex}
\input{ThirdParty.tex}
\input{SingleDish.tex}
\printindex
​
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