casa-mp-base

# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4

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PortSystem          1.0

PortGroup           python 1.0

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name                py-pysam

set realname        pysam

version             0.15.1

revision            1

categories-append   science

platforms           darwin

license             MIT BSD

maintainers         {soap.za.net:git @SoapZA} openmaintainer

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description         Python interface for the SAM/BAM sequence \

                    alignment and mapping format

long_description    Pysam is a python module for reading and manipulating \

                    Samfiles. It's a lightweight wrapper of the samtools C-API.

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homepage            https://pypi.python.org/pypi/${realname}

​

master_sites        pypi:p/${realname}

distname            ${realname}-${version}

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checksums           rmd160  f44ed399f80325bb084d254a3d16d97c6bc25f0f \

                    sha256  658421124c2f3de1b7445e03ca8413df0077f67ea9980abdaab0d1b5f7a8936f \

                    size    3220356

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python.versions     27 36 37

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patchfiles          patch-pysam-remove-RPATH.diff

patchfiles          patch-pysam-fix-missing-files.diff

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if {${name} ne ${subport}} {

    depends_build       port:py${python.version}-setuptools \

                        port:py${python.version}-cython

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    depends_lib-append  port:bzip2 \

                        port:curl \

                        port:xz \

                        port:zlib

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    livecheck.type      none

} else {

    livecheck.name      pysam

    livecheck.regex     pysam-(\\d+(\\.\\d+)+)${extract.suffix}

}

​

configure.env       HTSLIB_MODE=shared