casa-mp-base

PortSystem      1.0

PortGroup       ruby 1.0

​

ruby.setup      bioruby 0.6.2 install.rb {README doc sample test etc}

revision        2

maintainers     nomaintainer

description     Integrated environment for bioinformatics.

long_description    BioRuby project aims to implement an integrated environment \

                    for Bioinformatics with Ruby language. Design philosophy of \

                    the BioRuby library is KISS (keep it simple and stupid) to \

                    maximize the usability and the efficiency for biologists as a \

                    daily tool.

categories-append   science

license             GPL-2+

checksums           md5 68c7ae5aa8562bfe1021d9a5201a9581

homepage            http://bioruby.org

master_sites        http://bioruby.org/archive/

platforms           darwin

depends_lib-append  port:rb-bdb \

                    port:rb-http-access2

variant mysql       {

                        depends_lib-append port:rb-dbd-mysql

                    }

variant postgres    {

                        depends_lib-append port:rb-dbd-pg

                    }

post-destroot {

    # /usr/bin/env ruby -> ruby1.8

    reinplace -locale C "s%#!.*ruby%#!${ruby.bin}%" \

        ${destroot}${ruby.bindir}/br_biofetch.rb \

        ${destroot}${ruby.bindir}/br_bioflat.rb \

        ${destroot}${ruby.bindir}/br_biogetseq.rb \

        ${destroot}${ruby.bindir}/br_pmfetch.rb

}