casa-mp-base

# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4

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PortSystem          1.0

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name                PEAR

version             0.9.8

categories          science

platforms           darwin

license             CC-BY-NC-SA-3

maintainers         yahoo.com:mashavecher

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description         PEAR - Paired-End reAd mergeR

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long_description    PEAR is an ultrafast, memory-efficient and highly \

                    accurate pair-end read merger. It is fully parallelized \

                    and can run with as low as just a few kilobytes of memory.

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homepage            http://www.exelixis-lab.org/web/software/pear

master_sites        http://sco.h-its.org/exelixis/web/software/pear/files/

distname            pear-${version}

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checksums           rmd160  c9703233b188527dcd281f6a2cc5f924a3a3828a \

                    sha256  0fff7401d63141d9235aa28174113f346a039743c0c679b435f5230a32b28728

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depends_lib         port:bzip2 \

                    port:zlib

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patchfiles          patch-configure.diff

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notes "

The PEAR creative commons license prohibits commercial use of the code.\

For testing and using PEAR on a commercial basis you need to purchase a\

commercial software license.\

If you wish to purchase such a license please contact:

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Prof. Alexandros Stamatakis <Alexandros.Stamatakis@h-its.org>

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Citation - PEAR: a fast and accurate Illumina Paired-End reAd mergeR

Zhang et al (2014) Bioinformatics 30(5): 614-620 | doi:10.1093/bioinformatics/btt593

"