casa-mp-base

# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4

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PortSystem 1.0

PortGroup           compiler_blacklist_versions 1.0

PortGroup           cxx11 1.1

PortGroup           github 1.0

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github.setup        bredelings BAli-Phy 3.0.3

name                bali-phy

revision            0

description         Estimation of phylogeny and multiple alignment via MCMC

long_description    Estimation of phylogeny and multiple alignment via MCMC \

                    BAli-Phy that estimates multiple sequence alignments and \

                    evolutionary trees from DNA, amino acid, or codon sequences.\

                    BAli-Phy uses MCMC and Bayesian  methods to estimate \

                    evolutionary trees, positive selection, and branch lengths \

                    while averaging over alternative alignments. \

                     \

                    BAli-Phy can also estimate phylogenies from a fixed \

                    alignment (like MrBayes and BEAST) using substitution \

                    models like GTR+gamma.  BAli-Phy automatically estimates \

                    relative rates for each gene.

categories          science

platforms           darwin

license             GPL-2+

maintainers         {gmail.com:benjamin.redelings @bredelings} openmaintainer

homepage            http://www.bali-phy.org/

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checksums           rmd160  60c6b2da4f196f68b958e3360f9415fb689729bc \

                    sha256  4cdfb16b50c4a06e1cf6691d22cc3a5401e0cdb55dbb0ff379c779eb660e060d \

                    size    12455696

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depends_build-append \

                    port:pkgconfig \

                    port:automake \

                    port:autoconf \

                    port:libtool \

                    port:eigen3

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depends_lib         port:boost \

                    path:lib/pkgconfig/cairo.pc:cairo

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patchfiles          scripts.patch

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# Needs support for -std=c++14.

compiler.blacklist-append \

                    {clang < 602}

​

# build in source directory until we switch to meson

pre-configure       { system -W ${worksrcpath} "./bootstrap.sh"}

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configure.args      --with-system-boost --with-system-eigen

configure.env-append \

                     BOOST_SUFFIX=-mt