casa-mp-base

# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4

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PortSystem              1.0

PortGroup               github 1.0

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github.setup            samtools bcftools 1.8

categories              science

platforms               darwin

maintainers             {ryandesign @ryandesign} openmaintainer

license                 {MIT GPL-3}

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description             utilities for variant calling and manipulating VCF and \

                        BCF files

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long_description        BCFtools implements utilities for variant calling (in \

                        conjunction with SAMtools) and manipulating VCF and \

                        BCF files. The program is intended to replace the \

                        Perl-based tools from vcftools.

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checksums               rmd160  b9ce4acadf4b4cb308bad6279d24b8918416f493 \

                        sha256  4acbfd691f137742e0be63d09f516434f0faf617a5c60f466140e0677915fced \

                        size    3110873

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homepage                http://www.htslib.org/

github.tarball_from     releases

use_bzip2               yes

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depends_lib             port:bzip2 \

                        port:xz \

                        port:zlib

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use_configure           no

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variant universal {}

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build.args              CC="${configure.cc} [get_canonical_archflags cc]"

​

destroot.args-append    prefix=${prefix}

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post-destroot {

    xinstall -d ${destroot}${prefix}/share/doc/${name}

    xinstall -m 644 -W ${worksrcpath} \

        AUTHORS LICENSE README \

        ${destroot}${prefix}/share/doc/${name}

}