casa-mp-base

# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4

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PortSystem          1.0

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name                bowtie

version             0.12.9

categories          science biology

platforms           darwin

maintainers         nomaintainer

license             Artistic-1 LGPL-3+

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description         an ultrafast, memory-efficient short read aligner

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long_description    Bowtie is ${description}. It aligns short DNA sequences \

                    (reads) to the human genome at a rate of over 25 million \

                    35-bp reads per hour. Bowtie indexes the genome with a \

                    Burrows-Wheeler index to keep its memory footprint small: \

                    typically about 2.2 GB for the human genome (2.9 GB for \

                    paired-end).

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homepage            http://bowtie-bio.sourceforge.net/

master_sites        sourceforge:project/bowtie-bio/${name}/${version}

use_zip             yes

extract.suffix      -src${extract.suffix}

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checksums           sha1    ce261d82695e6e97ffc1bc9c3f6651a9fbb2feba \

                    rmd160  e75b41d3cfa0ff69bf4cc19038613d15a8702c5d

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depends_build       bin:md5sum:md5sha1sum

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use_configure       no

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variant universal {}

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build.target        allall

build.args          CC=${configure.cc} CXX=${configure.cxx} \

                    EXTRA_FLAGS="[get_canonical_archflags]"

​

destroot {

    xinstall -W ${worksrcpath} \

        bowtie \

        bowtie-debug \

        bowtie-build \

        bowtie-build-debug \

        bowtie-inspect \

        bowtie-inspect-debug \

        ${destroot}${prefix}/bin

    xinstall -d ${destroot}${prefix}/share/doc/${name}

    xinstall -m 644 -W ${worksrcpath} \

        AUTHORS \

        COPYING \

        MANUAL \

        NEWS \

        TUTORIAL \

        VERSION \

        MANUAL.markdown \

        ${destroot}${prefix}/share/doc/${name}

}