casa-mp-base

--- Makefile.orig   2016-04-01 10:04:37.000000000 -0400

+++ Makefile    2016-04-01 10:04:17.000000000 -0400

@@ -34,26 +34,8 @@

 BOWTIE_MM = 1

 BOWTIE_SHARED_MEM = 0

-# Detect Cygwin or MinGW

-WINDOWS = 0

-MINGW = 0

-ifneq (,$(findstring MINGW,$(shell uname)))

-   WINDOWS = 1

-   MINGW = 1

-   # POSIX memory-mapped files not currently supported on Windows

-   BOWTIE_MM = 0

-   BOWTIE_SHARED_MEM = 0

-endif

-

-MACOS = 0

-ifneq (,$(findstring Darwin,$(shell uname)))

-   MACOS = 1

-   ifneq (,$(findstring 13,$(shell uname -r)))

-       CPP = clang++

-       CC = clang

-       override EXTRA_FLAGS += -stdlib=libstdc++

-   endif

-endif

+MACOS = 1

+override EXTRA_FLAGS += -stdlib=libstdc++

 POPCNT_CAPABILITY ?= 1

 ifeq (1, $(POPCNT_CAPABILITY))