casa-mp-base

# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4

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PortSystem          1.0

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name                cell-id

version             1.4.6

revision            1

categories          science biology

license             LGPL-2.1+

platforms           darwin

maintainers         fbmc.fcen.uba.ar:abush

description         Microscopy based cytometry segmentation software

long_description    Cell-ID is a command line software that segments bright field \

                    microscopy images of yeast and mammalian cells, tracks cells \

                    over time and quantifies morphological and fluorescence \

                    features for each cell.

homepage            http://sourceforge.net/projects/cell-id

master_sites        sourceforge:project/cell-id

distname            cell_id_${version}

use_zip             yes

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checksums           md5     add16051f92ff4b95ba73619cfd33036 \

                    sha1    d3e67b45af06d136b137ac2fca1a529e0f5f803b \

                    rmd160  1406f30acdd62d87f1135eaa5b8e791663237c70

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depends_lib         path:lib/pkgconfig/glib-2.0.pc:glib2 \

                    port:tiff

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post-patch {

    reinplace "s|-static|${configure.cflags} ${configure.cc_archflags}|g" ${worksrcpath}/Makefile

    reinplace "s|-I/local|-I${prefix}|g" ${worksrcpath}/Makefile

    reinplace "s|-L/local/lib|-I${prefix}/lib/glib-2.0/include -L${prefix}/lib|g" ${worksrcpath}/Makefile

    reinplace "s|rm cell|rm -f cell|g" ${worksrcpath}/Makefile

    reinplace "s|gcc|\$(CC)|g" ${worksrcpath}/Makefile

}

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use_configure       no

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pre-build {

    system -W ${worksrcpath} "${build.cmd} clean"

}

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build.target        cell

build.env           CC=${configure.cc}

use_parallel_build  no

​

destroot {

    xinstall ${worksrcpath}/cell ${destroot}${prefix}/bin/cell

    xinstall -d ${destroot}${prefix}/share/doc/${name}

    xinstall -m 644 -W ${worksrcpath} Cell-ID-help.txt GNU_Lesser_General_Public_License.txt \

        README.txt cell_id_description_of_output_file_R.txt \

        cell_id_description_of_output_files_PAW.txt parameters.txt \

        ${destroot}${prefix}/share/doc/${name}

}