casa-mp-base

# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4

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PortSystem          1.0

PortGroup           qmake 1.0

​

name                clustalx

version             2.1

revision            1

categories          science

maintainers         {snc @nerdling} openmaintainer

license             LGPL-3 GPL-3

description         An interface for the ClustalW multiple sequence alignment\

                    program.

long_description    ${name} provides an integrated environment for performing\

                    multiple sequence and profile alignments and analysing the\

                    results. The sequence alignment is displayed in a window on\

                    the screen. A versatile coloring scheme has been\

                    incorporated allowing you to highlight conserved features\

                    in the alignment. The pull-down menus at the top of the\

                    window allow you to select all the options required for\

                    traditional multiple sequence and profile alignment.

homepage            http://www.clustal.org/clustal2/

​

platforms           darwin

​

master_sites        http://www.clustal.org/download/current/ \

                    ftp://ftp.ebi.ac.uk/pub/software/clustalw2/${version}/

​

dist_subdir         ${name}/${version}_1

checksums           rmd160  a50b74d2b698a6ab618c5ce8bcb0139976814ffd \

                    sha256  e10adb728c320598a165ca529f1aa3d2560061de0236e0a0926eaca9554afa05 \

                    size    341649

​

patchfiles          string.patch

​

configure.ldflags-append \

                    -F${qt_frameworks_dir}

​

destroot {

    xinstall -d ${destroot}${applications_dir}/${name}.app/Contents/MacOS

    xinstall -d ${destroot}${applications_dir}/${name}.app/Contents/Resources

    xinstall -m 755 {*}[glob ${worksrcpath}/${name}.app/Contents/MacOS/*] \

        ${destroot}${applications_dir}/${name}.app/Contents/MacOS/

    xinstall -m 755 {*}[glob ${worksrcpath}/${name}.app/Contents/Resources/*] \

        ${destroot}${applications_dir}/${name}.app/Contents/Resources/

    xinstall -m 644 -W ${worksrcpath} \

        colprot.xml coldna.xml colprint.xml clustalx.hlp \

        ${destroot}${applications_dir}/${name}.app/Contents/MacOS/

}

​

livecheck.type      regex

livecheck.url       ${homepage}

livecheck.regex     "currently (\\d+(\\.\\d+)+)"