casa-mp-base

--- ../exonerate-2.2.0.orig/src/program/Makefile.in 2008-10-17 11:04:45.000000000 +0100

+++ ./src/program/Makefile.in   2012-02-24 11:53:57.000000000 +0000

@@ -361,9 +361,9 @@

 mostlyclean distclean maintainer-clean

 c4_model_archive.h: $(BOOTSTRAPPER)

-   $(BOOTSTRAPPER) --compiled no

+   CFLAGS="$(CFLAGS)" $(BOOTSTRAPPER) --compiled no

 c4_model_archive.a: $(BOOTSTRAPPER)

-   $(BOOTSTRAPPER) --compiled no

+   CFLAGS="$(CFLAGS)" $(BOOTSTRAPPER) --compiled no

 # Special viterbi.o and scheduler.o for compiled model linking

 viterbi.o: $(top_srcdir)/src/c4/viterbi.c