casa-mp-base

# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4

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PortSystem              1.0

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name                    mapm3

version                 3.0

revision                5

platforms               darwin

maintainers             ryandesign openmaintainer

categories              science

license                 Restrictive

description             cli tool for calculating Quantitative Trait Loci

long_description        ${name} is a ${description}.

master_sites            http://www.broadinstitute.org/ftp/distribution/software/mapmaker3/

homepage                [lindex ${master_sites} 0]

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distname                ${name}-source

extract.suffix          .tar.Z

checksums               md5 8aa7a061d32a49c8704c1a5c4b31aa2d

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depends_lib             port:ncurses

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extract.mkdir           yes

extract.cmd             uncompress

extract.pre_args        -c

extract.post_args       | tar -C ${worksrcpath} -xf -

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patchfiles              patch-iolib.h \

                        patch-xmapmaker \

                        patch-Makefile \

                        patch-reader.c.diff \

                        patch-system.h \

                        patch-xqtl

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use_configure           no

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build.args              DIR=${prefix}/bin \

                        COMPILE="${configure.cc} [get_canonical_archflags cc] -fwritable-strings" \

                        LINKALL="${configure.cc} [get_canonical_archflags cc]" \

                        LINKLIB="ld [get_canonical_archflags ld] -r"

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destroot.destdir        DIR=${destroot}${prefix}/bin

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post-destroot {

    xinstall -d ${destroot}${prefix}/libexec/${name}

    foreach prog {mapmaker qtl} {

        move ${destroot}${prefix}/bin/${prog} ${destroot}${prefix}/libexec/${name}

        xinstall -m 755 ${filespath}/wrapper.in ${destroot}${prefix}/bin/${prog}

        reinplace "s%@PREFIX@%${prefix}%g" ${destroot}${prefix}/bin/${prog}

    }

}

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variant large_datasets {

    post-patch {

        reinplace \

            "s|^SYS= -D_SYS_DARWIN -DUSE_RAND48|SYS= -D_SYS_DARWIN -DUSE_RAND48 -D_BIG_DATASETS|g" \

            "${worksrcpath}/Makefile"

    }

}

​

livecheck.type          none