casa-mp-base

PortSystem 1.0

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name            ncbi_tools

version         20080302

description     blast is a set of tools for doing nucleotide and protein searches

maintainers     nomaintainer

categories      science

platforms       darwin

homepage        https://www.ncbi.nlm.nih.gov/blast/

fetch.use_epsv  no

master_sites    ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/old/20080302

distfiles       ncbi.tar.gz

checksums       md5 f8de9d7264aed7de1d87d2185df2e07c

dist_subdir     ${name}/${version}

extract.mkdir   yes

​

patchfiles      darwin.ncbi.mk.diff

if {[string match *64* $build_arch]} {

    patchfiles-append c-toolkit-no-carbon.patch

}

​

use_configure   no

use_parallel_build no

build.cmd       './ncbi/make/makedis.csh'

build.target

set binaries    "blastall         dosimple         gil2bin \

asn2ff           blastall_old     entrcmd          idfetch          seedtop \

asn2gb           blastcl3         impala           seqtest \

asn2idx          blastclust       errhdr           indexpub         tbl2asn \

asn2xml          blastpgp         fa2htgs          makemat          test_regexp \

asndhuff         cdscan           fastacmd         makeset          testcore \

asntool          checksub         findspl          megablast        testobj \

bl2bag.cgi       copymat          formatdb         ncbisort         testval \

bl2seq           formatrpsdb      nph-viewgif.cgi \

blast            debruijn         gene2xml         vecscreen \

demo_regexp      getmesh          wblast2.REAL \

demo_regexp_grep getpub           rpsblast         wblast2_cs.REAL"

​

set manpages    "Psequin.1       asnval.1        cleanasn.1      formatdb.1      insdseqget.1    tbl2asn.1 \

asn2all.1       bl2seq.1        copymat.1       formatrpsdb.1   makemat.1       trna2sap.1 \

asn2asn.1       blast.1         ddv.1           gbseqget.1      makeset.1       trna2tbl.1 \

asn2ff.1        blastall.1      debruijn.1      gene2xml.1      megablast.1     udv.1 \

asn2fsa.1       blastall_old.1  entrez2.1       getmesh.1       nps2gps.1       vecscreen.1 \

asn2gb.1        blastcl3.1      errhdr.1        getpub.1        rpsblast.1 \

asn2idx.1       blastclust.1    fa2htgs.1       gil2bin.1       sbtedit.1 \

asn2xml.1       blastpgp.1      fastacmd.1      idfetch.1       seedtop.1 \

asndhuff.1      cdscan.1        findspl.1       impala.1        sortbyquote.1 \

asntool.1       checksub.1      fmerge.1        indexpub.1      spidey.1"

​

destroot {

    xinstall -m 755 -d  ${destroot}${prefix}/share/doc/${name}

    file copy ${worksrcpath}/ncbi/doc ${destroot}${prefix}/share/doc/${name}

    foreach binary ${binaries} {

        xinstall -m 755 ${worksrcpath}/ncbi/bin/${binary} ${destroot}${prefix}/bin/

    }

    foreach manpage ${manpages} {

        xinstall -m 444 ${worksrcpath}/ncbi/doc/man/${manpage} ${destroot}${prefix}/share/man/man1/

    }

}

​

long_description    ${description}

livecheck.type      regex

livecheck.url       ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools/