casa-mp-base

# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4

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PortSystem              1.0

PortGroup               github 1.0

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github.setup            samtools samtools 1.9

categories              science

platforms               darwin

maintainers             {ryandesign @ryandesign} openmaintainer

license                 MIT

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description             Tools for alignments in the SAM format

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long_description        SAM (Sequence Alignment/Map) Tools provide various \

                        utilities for manipulating alignments in the SAM \

                        format, including sorting, merging, indexing and \

                        generating alignments in a per-position format.

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checksums               rmd160  b7f49e1bdd569f63ec53330f43df7e5566ba8a16 \

                        sha256  083f688d7070082411c72c27372104ed472ed7a620591d06f928e653ebc23482 \

                        size    4440405

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homepage                http://www.htslib.org/

github.tarball_from     releases

use_bzip2               yes

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depends_lib             port:ncurses \

                        port:xz \

                        port:zlib

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use_configure           no

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variant universal {}

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build.args              CC="${configure.cc} [get_canonical_archflags cc]"

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destroot {

    xinstall -m 755 ${worksrcpath}/samtools ${destroot}${prefix}/bin

    xinstall -m 644 ${worksrcpath}/libbam.a ${destroot}${prefix}/lib

    xinstall -m 644 ${worksrcpath}/samtools.1 ${destroot}${prefix}/share/man/man1

    xinstall -d ${destroot}${prefix}/include/bam

    xinstall -m 644 {*}[glob ${worksrcpath}/*.h] ${destroot}${prefix}/include/bam

    xinstall -d ${destroot}${prefix}/share/doc/${name}

    xinstall -m 644 -W ${worksrcpath} \

        AUTHORS LICENSE NEWS README \

        ${destroot}${prefix}/share/doc/${name}

}

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test.run                yes

test.target             check

test.args               {*}${build.args}

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depends_test-append     port:htslib