casa-mp-base

# -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4

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PortSystem          1.0

PortGroup           cmake 1.0

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name                seqan-apps

version             2.2.0

revision            2

categories          science

platforms           darwin

universal_variant   no

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license             BSD LGPL-3 GPL-3

maintainers         fu-berlin.de:rene.rahn

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description         Applications distributed with the SeqAn library

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long_description    SeqAn applications for the analysis of large sets of sequences, e.g. \

                    read mapping, genome comparison, local alignment, data mining.

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homepage            http://www.seqan.de/applications/

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depends_build-append    port:boost port:coinor-liblemon

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master_sites        http://packages.seqan.de/seqan-src

distfiles           seqan-src-${version}${extract.suffix}

distname            seqan-seqan-v${version}

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checksums           rmd160  c8f7ba426d96339bfa96ae735f0a2cae219e0020 \

                    sha256  6add074932c2723ef1fb658c88f906bdd6ced1fc34cb16a7410251ffc4cb8cc8

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# llvm-gcc42 is broken and won't be fixed anymore, see: https://trac.macports.org/ticket/40713

# For OpenMP only the apple clang version really needs to be blacklisted.

# Macports clang-3.8 and higher fully support OpenMP 3.1, so we make them the default fallback option and remove gcc from this list.

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compiler.blacklist  *gcc* *clang-3.7 *clang-3.6 *clang-3.5 *clang-3.4 *clang-3.3 *dragonegg*

compiler.fallback   macports-clang-3.9 macports-clang-3.8

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configure.args-append   -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_APPS

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livecheck.url       http://packages.seqan.de/

livecheck.regex     seqan-src-(\[0-9.\]+)${extract.suffix}