casa-mp-base

--- dssp/DsspCompileGCC.orig    2006-04-04 06:53:36.000000000 -0500

+++ dssp/DsspCompileGCC 2010-12-18 02:16:10.000000000 -0600

@@ -1,10 +1,10 @@

 echo "Running script to compile the CMBI version of DSSP, please wait..."

-gcc -c -O -Wall -DGCC AccSurf.c

-gcc -c -O -Wall -DGCC CalcAccSurf.c

-gcc -c -O -Wall -DGCC Contacts.c

-gcc -c -O -Wall -DGCC Date.c

-gcc -c -O -Wall -DGCC DsspCMBI.c

-gcc -c -O -Wall -DGCC Vector.c

-gcc -c -O -Wall -DGCC p2clib.c

-gcc -static -o dsspcmbi DsspCMBI.o p2clib.o Date.o Vector.o AccSurf.o CalcAccSurf.o Contacts.o -lm

+${CC} -c -O3 -Wall -DGCC AccSurf.c

+${CC} -c -O3 -Wall -DGCC CalcAccSurf.c

+${CC} -c -O3 -Wall -DGCC Contacts.c

+${CC} -c -O3 -Wall -DGCC Date.c

+${CC} -c -O3 -Wall -DGCC DsspCMBI.c

+${CC} -c -O3 -Wall -DGCC Vector.c

+${CC} -c -O3 -Wall -DGCC p2clib.c

+${CC} -o dsspcmbi DsspCMBI.o p2clib.o Date.o Vector.o AccSurf.o CalcAccSurf.o Contacts.o -lm

 echo "Type dsspcmbi PDBSourcefile DSSPDestinationfile to run the program..."

--- Makefile_whatcheck.orig 2010-08-10 07:40:36.000000000 -0500

+++ Makefile_whatcheck  2010-12-18 02:16:10.000000000 -0600

@@ -2,13 +2,13 @@

 # Automatically created by DO_INSTALL.SH

 DEFINES=-DUNIX -DCTEXT -DF2C -DGLX11 -DX11 -DDX4 -DLITE -DWHATCHECK

-OPTFLAGS=-O2 -Wall -m32 -Wsurprising

-LIBS= -L/usr/X11R6/lib -lX11 -lm -lcrypt

+OPTFLAGS=-O3 -Wall -Wsurprising

+LIBS= -L@PREFIX@/lib -lX11 -lm 

 ANSICC=cc

 KRCC=cc

-INCLUDES= -I/usr/X11R6/include -I.

-F77=g77 -xf77-cpp-input -Wsurprising

-LD=g77

+INCLUDES= -I@PREFIX@/include -I.

+F77=@F77@ -xf77-cpp-input -Wsurprising -fbackslash

+LD=@F77@

 # End-Of-Configuration: Do not delete this line!!!

@@ -56,10 +56,10 @@

    @echo please ignore error message and re-execute make

    exit 3

-SRCFILES = $(addprefix ../whatif/src/, $(OBJECTS:%.o=%.f))

+SRCFILES = $(addprefix ., $(OBJECTS:%.o=%.f))

 DSTFILES = $(notdir $(SRCFILES:%.f=%.F))

-%.F: ../whatif/src/%.f

+%.F: ./%.f

    sed -r "s/^[Cc].+//" $< | g77  -xf77-cpp-input -E $(DEFINES) - | sed -r "s/^#.+//" > $@

 %.INC: ../whatif/src/%.INC

@@ -69,7 +69,7 @@

    cat $(DSTFILES) > obfuscated.f

 support.o: support.c

-   gcc $(DEFINES) -c -o $@ $<

+   $(CC) -O3 -I /usr/include $(DEFINES) -c -o $@ $<

 version.f: $(OBJECTS)