Pull request #1825: PIPE-2947: Improve `_savgol_filter_nan` to pad NaNs around masked regionsMerge in PIPE/pipeline from PIPE-2947-savgol-filter-nan-version2 to main
* commit '1364dd8064999cc14aa5c71df7c178e6dc5928a2':
PIPE-2947: Make `_savgol_filter_nan` signature compatible with `savgol_filter`
PIPE-2947: Improve _savgol_filter_nan to pad NaNs around masked regions
Pull request #1664: PIPE-2582: updated QA criteria for semiFinalBPdcalsMerge in PIPE/pipeline from PIPE-2582-hifv_semifinalbpdcals-qa-criteria to main
* commit '9b09ac10aa3c105cbc95aee66acc0e6dfab10eaf':
PIPE-2582: Changes suggested in PR review
PIPE-2582: present warning if spw is fully flagged, or mulitple antennas are fully flagged
PIPE-2582: Skipping the spectral line SPW fully flagged warning if the offending antenna is fully flagged
PIPE-2582: passi...
Pull request #1810: PIPE-3085: reduce MS open callsMerge in PIPE/pipeline from PIPE-3085-improve-the-freq-frame--chan-conversion-speed-within-fluxcalflag to main
* commit 'ad315c171f1d6b940df0fe50f4c392b23effb04e':
PIPE-3085: Replace singleton ms tool with MSReader; add type hints
PIPE-3085: Extend MS open optimization to `correctedampflag`, `rawflagchans`, `gcorfluxscale`
PIPE-3085: Reduce MS open overhead in `hif_applycal` weblog rende...
PIPE-2947: Make `_savgol_filter_nan` signature compatible with `savgol_filter`Promote `polyorder` from **kwargs to an explicit parameter, matching
savgol_filter's positional signature. Update call site keyword order
to reflect the new signature.
Pull request #1775: PIPE-3016 polarization calibration recipes second hifa bandpass after hifa lockrefant should notMerge in PIPE/pipeline from PIPE-3016-polarization-calibration-recipes-second-hifa_bandpass-after-hifa_lockrefant-should-not to main
* commit '73c2dd1ef7a52b32229634b19b59610cd75013d2':
PIPE-3016 edit to move table unregister to within merge to context at end of stage run
PIPE-3016: minor codestyle changes.
PIPE-3016 typos and better commentary
PIPE-3016 add parameter to unregister the...
Pull request #1820: PIPE-2209: replace call to deprecated AntennaArray.baselinesMerge in PIPE/pipeline from PIPE-2209-eliminate-antennaarray.baselines-deprecation-warning to main
* commit '67aeda9c8e55a6aed96d04b61dc934e82d2960ed':
PIPE-2209: remove deprecated `baselines`/`_baselines` in AntennaArray
PIPE-2209: remove debugging leftover
PIPE-2209: replace call to deprecated AntennaArray.baselines
Pull request #1818: PIPE-3089: Fix caltable filename inconsistency between serial and parallel modesMerge in PIPE/pipeline from PIPE-3089-caltable-filenames-might-differ-between-serial-and-parallel-modes-for-some-alma-cal-tasks to main
* commit '5a560095bf4b576af51b2d4a67e4fa35279b7235':
PIPE-3089: set NamingTemplate.task on MPI/Dask workers
Pull request #1802: PIPE-2967 hsd k2jycal backup url for jy k db queryMerge in PIPE/pipeline from PIPE-2967-hsd_k2jycal-backup-url-for-jy-k-db-query to main
* commit 'aedad0e415d5cf24d1920ae51eae2aabaad2c2b8':
revert max casa version
PIPE-2967 removed unnecessary rstrip operation
PIPE-2967 safely remove trailing newline
PIPE-2967 replace "hosts" in the variable names with "urls"
reverse the order of log records to be displayed with original order
imp...
Pull request #1797: PIPE-2958 hsd imaging implement qa score based on the ratio of observed image rms to the theoreticalMerge in PIPE/pipeline from PIPE-2958-hsd_imaging-implement-qa-score-based-on-the-ratio-of-observed-image-rms-to-the-theoretical to main
* commit 'a0a1a262c66310e2ba8aa7111c0e10841400bb14':
PIPE-2958: improved the code for the thresholds of the relevant qascore
PIPE-2958: fix incomplete f-strings, remove unnecessary str() conversion
PIPE-2958: further correction
PIPE-2958: correct an a...
Pull request #1764: PIPE-3002: importdata weblog might not render correctly if a polcal field selected for a parallactic angle plot is present in one EB but not the other, within a single sessionMerge in PIPE/pipeline from PIPE-3002-importdata-weblog-might-not-render-correctly-if-a-polcal-field-selected-for-a-parallactic to main
* commit 'b3cdb891bd8c5b1b00db9fa2bc02d97a6e7f86c4':
PIPE-3002: renamed variable inside list comprehension to prevent shadowing and confusion with the outside variable of the same name; added same safeguard in hifv/importdata/renderer as in hifa
added cond...
Pull request #1800: PIPE-3079: Documentation: Context Use Cases and ImprovementsMerge in PIPE/pipeline from context-use-cases to main
* commit 'd996090a04c869254ff5b3b5974206bbf57692c6':
PIPE-3079: consolidated implementation notes to reduce redundancy
PIPE-3079: removed sections 3 and 4 and appendix A; added clarification stating these use cases are retrospective
PIPE-3079: removed hanging header section
PIPE-3079: updated document language to be more reflective ...
Pull request #1813: PIPE-3078: Remove clean mask deletion between `.iter1` and `.iter2` in continuum TARGET imagingMerge in PIPE/pipeline from PIPE-3078-vla-imaging-pipeline-deletes-mask-between-iter1-and-iter2 to main
* commit '0d7c97da2e9984319ed164cc3493c19cf09afb57':
PIPE-3078: Remove clean mask deletion between `.iter1` and `.iter2` in continuum TARGET imaging
Pull request #1819: PIPE-1868 change wvrgcalflag score such that aca data with insufficient pm antennas for a solutionMerge in PIPE/pipeline from PIPE-1868-change-wvrgcalflag-score-such-that-aca-data-with-insufficient-pm-antennas-for-a-solution to main
* commit 'e43129fe6475b7b3ba6183b8de5cf33d50a47ef0':
PIPE-1868: Add PHgood and BPgood flags to WvrgcalResult; update score calculation in WvrgcalflagQAHandler
PIPE-1868 adding score update to blue 0.67 for good bandpass pre-WVR phase RMS
PIPE-1868 update ...
Pull request #1815: PIPE-3068: clone PIPE-3040/PIPE-2461/PIPE-3091 changes to the main branchMerge in PIPE/pipeline from PIPE-3068-clone-pipe-3040-and-pipe-2461-changes-to-the-main-branch to main
* commit 'c9ec29a7bedff884fee0f6ff2b1429b8c5ad3bac': (45 commits)
PIPE-3068: moving __future__ import to top of imaging.py
PIPE-3091: updated comments for vlass fits keywords
PIPE-3068: adding changes from PIPE-3060 and PIPE-3051
PIPE-3068: adding documentation for vlass fits header k...
PIPE-3085: Extend MS open optimization to `correctedampflag`, `rawflagchans`, `gcorfluxscale`Hoist casa_tools.MSReader outside the inner loops in three additional
tasks, following the same pattern established for hif_applycal weblog
rendering:
- hif_correctedampflag: open once for the intent × field × spw loop
in _run_flagging_iteration; thread ms_handle through
_evaluate_heuristic → _evaluate_heuristic_for_baseline_set →
mstools.read_channel_averaged_data_from_ms.
- hif_rawflag...
PIPE-3085: Reduce MS open overhead in `hif_applycal` weblog renderingReduce the cost of opening measurement sets in get_brightest_field()
by reusing a single MS handle across all (field, spw) iterations instead
of opening and closing the MS once per combination. On lazy-import data
sets, where the DATA column is ASDM-backed, this cuts the applycal
post-processing time significantly (observed ~50 min saving on a
2496-call dataset).
- renderer.py: open MS once wi...
PIPE-3089: set NamingTemplate.task on MPI/Dask workersNamingTemplate.task is set by basetask.execute() only when
is_top_level_task() is True, which is always False on MPI servers.
This caused worker-side data product filenames to lack the task name
prefix, breaking any logic relying on filename content (e.g. the
amplitude caltable lookup in hifa_gfluxscale).
In Tier0PipelineTask.get_executable(), resolve the Pipeline task name from
task_registry ...
PIPE-3002: renamed variable inside list comprehension to prevent shadowing and confusion with the outside variable of the same name; added same safeguard in hifv/importdata/renderer as in hifa
PIPE-3085: hifa_fluxcalflag - cache SPW freq grids and use searchsorted in _get_chanrangeOpen the MS once per prepare() call instead of once per line candidate,
and cache the cvelfreqs result per (vis, fieldid, spwid, refframe) via a
new _get_spw_freqs helper. Replace the O(N) linear channel scan with
np.searchsorted for O(log N) boundary lookup. Also convert %-style LOG
calls to lazy-format style and raise ValueError instead of Exception.
PIPE-3079: updated document language to be more reflective of current behavior and removed suggestions related to an unrelated future design; migrated GAP scenarios to observations and limitations, removing specific implementation suggestions
Pull request #1806: PIPE-2738: Update RTD setupMerge in PIPE/pipeline from PIPE-2738-update-readthedocs-yaml to main
* commit 'f2cc52c1605ce1c02653e06d845bc3581eeaad47':
PIPE-2738: Update ReadTheDocs configuration to use Python 3.12 and Pixi for building documentation
Rui Xue
Ajay Vibhute
Luke Maud
Takeshi Nakazato