AuthorCommitMessageCommit dateIssues
Takeshi NakazatoTakeshi Nakazato
aa8b5873729MPull request #1385: PIPE-2264 improve numpy 2 compatibilityMerge in PIPE/pipeline from PIPE-2264-improve-numpy-2-compatibility to main * commit 'e2cad6514b1d16995ba318197fdb9a89b1811455': (34 commits) Do not import bdsf on CASA 6.6.6+ Bump minimum casa version Increment astropy version Constrain input value to 1-d list Revert temporal change on hsd/tasks/imaging/worker.py Porting findContinuum version 8.2 porting almarenorm v2.1 proper...PIPE-2264
Takeshi NakazatoTakeshi Nakazato
e2cad6514b1MMerge branch 'main' into PIPE-2264-improve-numpy-2-compatibilityPIPE-2264
Takeshi NakazatoTakeshi Nakazato
15c2c6ea6eeMPull request #1384: PIPE-1719 improve python 3.10 compatbilityMerge in PIPE/pipeline from PIPE-1719-improve-python-3.10-compatbility to main * commit 'b22f8c90f7538f2ed9681a7363ba13ae86f06201': remove unnecessary cast to list Replacement of cElementTree with ElementTree for other files. xml module changes for Python 3.10 compatibility use collections.abc submodule to refer collections abstract base classesPIPE-1719
Takeshi NakazatoTakeshi Nakazato
9787a340017Do not import bdsf on CASA 6.6.6+ Environment marker suggested by Rui (see PIPE-2359)Do not import bdsf on CASA 6.6.6+Environment marker suggested by Rui (see PIPE-2359)PIPE-2359
Takeshi NakazatoTakeshi Nakazato
bbd80b45c92Bump minimum casa version
Takeshi NakazatoTakeshi Nakazato
a618278abd7Increment astropy version
Takeshi NakazatoTakeshi Nakazato
605267cf9d4Constrain input value to 1-d listAlthough there is no mechanism to constrain numpy array input, constraint on the list was introduced to type hint. Implementation checks every list/ndarray elements if they are "value" (number or string) instead of list/ndarray.
Takeshi NakazatoTakeshi Nakazato
c204a649e36Revert temporal change on hsd/tasks/imaging/worker.pyThis reverts commits 3a0a2c2f9176383418a06d3c5c830b406437d107 and 0a6d900e8b307e4640608f0a82670d7cc8eb694c. By this commit, image products generated by this branch will change compared with the ones generated by CASA 6.6.1 (PL2024) due to the change of frequency interpolation method for imaging from "nearest" to "linear".
Takeshi NakazatoTakeshi Nakazato
b76ffbaa61dMPull request #1377: PIPE-2322 clone for main hsd baseline missing profile maps with huge deviation masksMerge in PIPE/pipeline from PIPE-2322-clone-for-main-hsd_baseline-missing-profile-maps-with-huge-deviation-masks to main * commit '52bf5ddb3e6c62ade8fe52e5c98ac8ebfeaa5d87': add comment on channel width PIPE-2322 use scipy.interpolate.interp1d to enable extrapolation PIPE-2322 add test for ch_to_freq update docstring refactoring for minor performance improvement Chery-pick PIPE-231...2 Jira issues
Takeshi NakazatoTakeshi Nakazato
e20b2aaa9c4Porting findContinuum version 8.2
Takeshi NakazatoTakeshi Nakazato
b22f8c90f75remove unnecessary cast to list
Takeshi NakazatoTakeshi Nakazato
2914d156ab7porting almarenorm v2.1Ported from almasw repository. branch URL: https://bitbucket.alma.cl/projects/ALMA/repos/almasw/browse?at=refs%2Fheads%2FICT-23760%2Frenorm commit: 1b5a3ca13e2
Takeshi NakazatoTakeshi Nakazato
516b5a4a4acproperly display observing pattern in pointing plot
Takeshi NakazatoTakeshi Nakazato
d624f7e5ca4Fix scorecalculator unit test failureIt seems that builtin sum in Python 3.10 tries to keep data type of the values to be summed up even if it causes overflow. On the other hand, np.sum flexibly changes data type of resulting value when data type is integer and the resulting value causes overflow with the input data type.
Takeshi NakazatoTakeshi Nakazato
d0031a98d9aFix mswrapper unit test failure
Takeshi NakazatoTakeshi Nakazato
c8067fbade6Replacement of cElementTree with ElementTree for other files.
Takeshi NakazatoTakeshi Nakazato
bb17a59a35eAdditoinal bug fix for tb.query issue
Takeshi NakazatoTakeshi Nakazato
19da091504cUse np.prod instead of deprecated np.productnumpy.product is deprecated since 1.25.0.
Takeshi NakazatoTakeshi Nakazato
0a6d900e8b3set interpolation method only when it's available as tsdimaging parameter
Takeshi NakazatoTakeshi Nakazato
07feee9880aAvoid contamination from previouw plotsThis is done by clearing Figure object explicitly before drawing
Takeshi NakazatoTakeshi Nakazato
1da9b7aad80Explicitly cast field id into Python int
Takeshi NakazatoTakeshi Nakazato
3a0a2c2f917temporarily use nearest interpolation for imagingThis must eventually be reverted to linear (default) once verification has been done.
Takeshi NakazatoTakeshi Nakazato
ceb3afc6e3cchange to fix weblog rendering error in hsd_imaiging
Takeshi NakazatoTakeshi Nakazato
3ca671064dduse tolist method to convert numpy array into Python list
Takeshi NakazatoTakeshi Nakazato
a02624416a4Removed unnecessary log handling from applycal qa code.A piece of code was wrapped by "with" statement to ignore numpy ComplexWarning. However, that code should not emit ComplexWarning according to the nature of the operation. So it should be safe to remove "with" block.
Takeshi NakazatoTakeshi Nakazato
361e3cc3979Use ndarray.tolist method to convert all list elements into Python builtin types
Takeshi NakazatoTakeshi Nakazato
0985a522388Use callable to avoid too long test case description
Takeshi NakazatoTakeshi Nakazato
3b7f099b90cuse isinstance instead of comparing type
Takeshi NakazatoTakeshi Nakazato
bcfa315d795Refactoring and supplemental comments
Takeshi NakazatoTakeshi Nakazato
206046ff3eeUpdated upstream repository information for extern/SDcalatmcorr.py
Takeshi NakazatoTakeshi Nakazato
9a4015f918bsupport converting long list
Takeshi NakazatoTakeshi Nakazato
af8936c1fedSwitch astropy version according to python versionEffectively, it installs astropy 5.2.2 on CASA 6.6.1 and 6.1.3 on CASA 6.6.6.
Takeshi NakazatoTakeshi Nakazato
3e9da803ee8Use np.str_ instead of deprecated np.unicode_This is the change for extern module
Takeshi NakazatoTakeshi Nakazato
dfff6087eaaReplace removed aliases with valid namesnp.NaN -> np.nan np.mat -> np.asmatrix
Takeshi NakazatoTakeshi Nakazato
58a8bbe9dd9Replace deprecated np.str_ with np.bytes_This is the change for extern module
Takeshi NakazatoTakeshi Nakazato
6beabd5ab15convert list into string safely for table queryThis is the change for extern module
Takeshi NakazatoTakeshi Nakazato
27750658a08use utility function to convert list/ndarray into stringIn Python 3.10 with NumPy 2.0.1, print(list(ndaray)) gives elements with data types such as '[np.int64(0), np.int64(1), np.int64(2)]'. Utility function was defined to avoid such unexpected string.
Takeshi NakazatoTakeshi Nakazato
4453f7cdac1define list_to_str
Takeshi NakazatoTakeshi Nakazato
4c6e1b801b0import numpy as npThis is for eval to recognize "np".
Takeshi NakazatoTakeshi Nakazato
b5f31478139Upgrade astropy to 6.1.3
Takeshi NakazatoTakeshi Nakazato
580c190b732MMerge branch 'PIPE-1719-improve-python-3.10-compatbility' into PIPE-2264-improve-numpy-2-compatibility2 Jira issues
Kristin BerryKristin Berry
631469f55f1MPull request #1381: PIPE-2328 clone update the task reference manual for pl2024 and add PIPE-2341 change to mainMerge in PIPE/pipeline from PIPE-2328-clone-update-the-task-reference-manual-for-pl2024 to main * commit '7634237de057c81d5b2a427397976dd6d41b6bc1': PIPE-2285: Add more information to hifv_mstransform docstring. PIPE-2285: Correct example in h_importdata docstring. Add additional whitespace in hsd_resotredata for consistency, and remove unnecessary parenthesis in hifv_restoredata. PIPE-2...3 Jira issues
Kristin BerryKristin Berry
7634237de05MPIPE-2328: Resolve conflicts with mainPIPE-2328
Vincent GeersVincent Geers
390f51f44e2MPull request #1379: PIPE-2327: clone of PIPE-2325 changes to merge to main: update task CLI docstring for restoredata tasksMerge in PIPE/pipeline from PIPE-2327_copytoraw_restoredata to main * commit '4934b819dba18a05fbf93bd2090fe73495b964a2': PIPE-2327: remove comment from hsdn_restoredata task CLI docstring (cloned from PIPE-2325). PIPE-2327: update task CLI docstring for hsdn_restoredata to document default behaviour for copytoraw and add parameter defaults (cloned from PIPE-2325). PIPE-2327: update task ...2 Jira issues
Takeshi NakazatoTakeshi Nakazato
3ba253b96fcxml module changes for Python 3.10 compatibility- avoid using deprecated method Element.getchildren - replace deprecated xml.etree.cElementTree with xml.etree.ElementTree
Takeshi NakazatoTakeshi Nakazato
b273a125b14use collections.abc submodule to refer collections abstract base classes
Takeshi NakazatoTakeshi Nakazato
52bf5ddb3e6add comment on channel width
Takeshi NakazatoTakeshi Nakazato
34de7513327PIPE-2322 use scipy.interpolate.interp1d to enable extrapolationPIPE-2322
Takeshi NakazatoTakeshi Nakazato
d02b60c9093PIPE-2322 add test for ch_to_freqPIPE-2322
Kristin BerryKristin Berry
da2d4235b40PIPE-2285: Add more information to hifv_mstransform docstring.PIPE-2285

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