casa-mp-base
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Ryan Schmidt authored 01f11fc9f98
| 1 1 | # -*- coding: utf-8; mode: tcl; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*- vim:fenc=utf-8:ft=tcl:et:sw=4:ts=4:sts=4 |
| 2 2 | |
| 3 3 | PortSystem 1.0 |
| 4 4 | PortGroup python 1.0 |
| 5 5 | |
| 6 6 | name py-pysam |
| 7 7 | set realname pysam |
| 8 8 | version 0.15.1 |
| 9 + | revision 1 |
| 9 10 | categories-append science |
| 10 11 | platforms darwin |
| 11 12 | license MIT BSD |
| 12 13 | maintainers {soap.za.net:git @SoapZA} openmaintainer |
| 13 14 | |
| 14 15 | description Python interface for the SAM/BAM sequence \ |
| 15 16 | alignment and mapping format |
| 16 17 | long_description Pysam is a python module for reading and manipulating \ |
| 17 18 | Samfiles. It's a lightweight wrapper of the samtools C-API. |
| 18 19 | |
| 26 27 | size 3220356 |
| 27 28 | |
| 28 29 | python.versions 27 36 37 |
| 29 30 | |
| 30 31 | patchfiles patch-pysam-remove-RPATH.diff |
| 31 32 | patchfiles patch-pysam-fix-missing-files.diff |
| 32 33 | |
| 33 34 | if {${name} ne ${subport}} { |
| 34 35 | depends_build port:py${python.version}-setuptools \ |
| 35 36 | port:py${python.version}-cython |
| 37 + | |
| 38 + | depends_lib-append port:bzip2 \ |
| 39 + | port:curl \ |
| 40 + | port:xz \ |
| 41 + | port:zlib |
| 42 + | |
| 36 43 | livecheck.type none |
| 37 44 | } else { |
| 38 45 | livecheck.name pysam |
| 39 46 | livecheck.regex pysam-(\\d+(\\.\\d+)+)${extract.suffix} |
| 40 47 | } |
| 41 48 | |
| 42 49 | configure.env HTSLIB_MODE="shared" |